Function reference
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data_HGDP - Sample data from the Human Genome Diversity Project
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data_TGP - Sample data from the 1000 Genomes Project
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hello_world() - Hello world
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map_HGDP - Corresponding tables for individuals and populations of the HGDP dataset
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map_TGP - Corresponding tables for individuals and populations of the TGP dataset
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plot_index_vs_K() - Plot the relationship between index and K
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plot_loss() - Plot the loss function
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plot_structure() - Plot the population proportion
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psd_error() - Compute the prediction error
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psd_fit_em() - Use EM algorithm to fit PSD model
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psd_fit_sqp() - Use SQP algorithm to fit PSD model
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psd_fit_svi() - Use SVI algorithm to fit PSD model
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psd_fit_vi() - Use VI algorithm to fit PSD model
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psd_loglikelihood() - Compute the loglikelihood
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psd_loglikelihood_svi() - Compute the loglikelihood of svi method in validation set
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psd_simulation() - Simulate data of PSD model